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BEAST is a program for inferring rooted, time-measured phylogenies using MCMC. It can test evolutionary hypotheses without conditioning on a single tree topology and has a user-friendly interface and tutorials.
Learn how to use BEAUti and BEAST to analyse some primate sequences and estimate a phylogenetic tree. This tutorial covers the basics of loading data, setting models, generating XML files and running BEAST.
If you are running BEAST on Linux or wish to have more control of the BEAGLE performance options on Mac OS X or Windows you will need to run BEAST from the command line. Running BEAST from the command line allows you to select which resource needs to be used for your analysis by using a command-line option.
2016年6月17日 · BEAST is a software for Bayesian evolutionary analysis of molecular sequences. Learn about the new features and bug fixes in version 1.8.4, such as citation list, fixed value, and relative rate parameters.
Learn how to download and install BEAST, a software package for phylogenetic analysis, on UNIX/Linux systems. Follow the instructions for using Conda, OpenJDK or Oracle Java, and running BEAUti and BEAST from the command line or a jar file.
Installing BEAST BEAST has been developed in Java , which allows the same code to run on any platform that has the Java software installed. We have also created packages for each of the common operating systems to provide a user-interface that is ‘native’ and familiar.
Tracer is a software package for visualising and analysing the MCMC trace files generated through Bayesian phylogenetic inference. Download Tracer v1.7.2 from GitHub and learn how to use it with tutorials and citation information.
Downloading BEAST BEAST can be downloaded from the following link: BEAST X v10.5.0-beta5 - Mac OS X binary 114MB This will download a disk image (a ‘.dmg’ file) probably into your Downloads folder.
TempEst is a software that can analyse the temporal signal and 'clocklikeness' of molecular phylogenies. It can also root the tree and check the molecular-clock assumption. Download TempEst from the link provided and cite the paper.
It is distributed in the same package as BEAST. To download it, go to the BEAST download page . Run BEAUti by double-clicking on the BEAUti icon in the package you downloaded.
